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Amorphous cell calculation in linux

Can any one tell me how to generate input files for amorphous cell calculation to run in linux machine. Actually I tried to generate input files from windows material studio but could not able to get it. Thank you

CarstenCarsten (Accelrys) 
Which Materials Studio version do you use?
Do you use the new Amorphous Cell version or the legacy version?

The immediate idea I have is that your input files are perhaps in DOS format and have to be converted to UNIX format (man dos2unix ). That at least was the case quite often in the past for other modules.